PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.004G145900.1
Common NamePHAVU_004G145900g
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family C2H2
Protein Properties Length: 468aa    MW: 52240.5 Da    PI: 9.0015
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.004G145900.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H218.55.5e-065779123
                        EEETTTTEEESSHHHHHHHHHHT CS
             zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                        y+C++C++ F r  nL+ H r+H
  Phvul.004G145900.1 57 YVCEICNQGFQRDQNLQMHRRRH 79
                        9*********************9 PP

2zf-C2H214.40.00011134156123
                         EEETTTTEEESSHHHHHHHHHHT CS
             zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                         ++C+ C+k +  +s++k H++t+
  Phvul.004G145900.1 134 WVCERCSKGYAVQSDYKAHLKTC 156
                         58*******************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576672.49E-55679No hitNo description
Gene3DG3DSA:3.30.160.601.9E-55679IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015710.975779IPR007087Zinc finger, C2H2
SMARTSM003550.00525779IPR015880Zinc finger, C2H2-like
PROSITE patternPS01359059139IPR019786Zinc finger, PHD-type, conserved site
PROSITE patternPS0002805979IPR007087Zinc finger, C2H2
SMARTSM0035519098128IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.606.9E-4125155IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576672.49E-5129154No hitNo description
SMARTSM00355100134161IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009590Biological Processdetection of gravity
GO:0009959Biological Processnegative gravitropism
GO:0009965Biological Processleaf morphogenesis
GO:0010031Biological Processcircumnutation
GO:0010601Biological Processpositive regulation of auxin biosynthetic process
GO:0048444Biological Processfloral organ morphogenesis
GO:2000012Biological Processregulation of auxin polar transport
GO:2000904Biological Processregulation of starch metabolic process
GO:0005634Cellular Componentnucleus
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 468 aa     Download sequence    Send to blast
MLANNLSPSS VPTSEPFPCT ENATATNKRK RRPAGTPDPD AEVVSLSPKT LLESDRYVCE  60
ICNQGFQRDQ NLQMHRRRHK VPWKLLKRET PVVRKRVFVC PEPTCLHHDP CHALGDLVGI  120
KKHFRRKHSN HKQWVCERCS KGYAVQSDYK AHLKTCGTRG HSCDCGRVFS RVESFIEHQD  180
ACNMGRLRPE SQPLQPSACL SRTASSPSPS SETNFSTAPW PTRIIIPKPT EAPTIFMNNP  240
TAAITTAETS SKNNNKLHPN LDLQLSTPTT TTNNNNNSSN VANPIDALIS TSLSPKRDHR  300
ENHSTHLQLS IGSSDVSEKN ESNRNSSEKS SNSNNAKQPN MALLRVQEQA REHLRIAMAE  360
KAYAEEARKQ AKRQIEVAEQ EFTNAKRIRQ QAQAELDKAY ALKEHAMKQI NSTMLQITCH  420
ACKQQFQARN ATPDENSLVL SYVSSAITTE GGEVENDNAK DHAKDNN*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00254DAPTransfer from AT2G01940Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150440.0AP015044.1 Vigna angularis var. angularis DNA, chromosome 11, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007152626.10.0hypothetical protein PHAVU_004G145900g
SwissprotF4IPE31e-158IDD15_ARATH; Protein SHOOT GRAVITROPISM 5
TrEMBLV7C5Q20.0V7C5Q2_PHAVU; Uncharacterized protein
STRINGGLYMA07G12170.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF17693289
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68130.11e-136indeterminate(ID)-domain 14